CryoViT

Getting Started

  • Installing CryoViT
  • Setting up Napari
  • Quick Start Guide

User Guide

  • Setting up a dataset
  • Running from the command line
  • Running using Napari

Help

  • Debugging Issues

API

  • cryovit.run
  • cryovit.models
  • cryovit.datasets
  • cryovit.datamodules
  • cryovit.types
  • cryovit.config
  • cryovit.utils
CryoViT
  • Overview: module code

All modules for which code is available

  • cryovit.config
  • cryovit.datamodules.base_datamodule
  • cryovit.datamodules.file_datamodule
  • cryovit.datamodules.fractional_sample_datamodule
  • cryovit.datamodules.multi_sample_datamodule
  • cryovit.datamodules.single_sample_datamodule
  • cryovit.datasets.file_dataset
  • cryovit.datasets.tomo_dataset
  • cryovit.datasets.vit_dataset
  • cryovit.models.base_model
  • cryovit.models.cryovit
  • cryovit.models.sam2
  • cryovit.models.unet3d
  • cryovit.run.dino_features
  • cryovit.run.eval_model
  • cryovit.run.infer_model
  • cryovit.run.train_model
  • cryovit.types
  • cryovit.utils

© Copyright 2025, Vivian Li, Sanket Gupte.

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